PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG465000.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 255aa    MW: 27545.6 Da    PI: 6.5275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG465000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.9e-1193140454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  Pavir.2KG465000.2.p  93 TKACREKIRRDKLNERFLELGAILEPG---KTPKMDKSAILNDAIRVVGEL 140
                          7789**********************9...9**************987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1380156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.59589140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-892143No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1392162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-893140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-995146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MASPEGTTWV FDCPLMDDLA VAADFAAAPA GGFFWSAPPP MQPLGAQAPM QAVAAAPAPS  60
PCVEISGSVD CDQGKEQTTN KRPRSESTAQ PSTKACREKI RRDKLNERFL ELGAILEPGK  120
TPKMDKSAIL NDAIRVVGEL RSEAKKLKDS NESLQEKIKE LKAEKNELRD EKQRLKAEKE  180
SLEQQIKFLN SRLSLVPHPP VIPASAFAAP QGPAAACHKL MMPVIGYPGF PMWQFMPPSD  240
VDTSNDPKSC PPVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.153240.0leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462974.11e-153hypothetical protein SORBIDRAFT_02g035580
SwissprotQ9FH371e-74ILR3_ARATH; Transcription factor ILR3
TrEMBLC5XAT21e-153C5XAT2_SORBI; Putative uncharacterized protein Sb02g035580
STRINGSb02g035580.11e-152(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-66bHLH family protein